NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
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Updated
May 7, 2024 - Jupyter Notebook
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Development repository for the Bioconductor package 'mixOmics '
Benchmarks for classification of genomic sequences
Ontology for consent codes and data use requirements
Pandas ExtensionDtypes for dealing with genomics data
An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of summary statistics from the IEU GWAS database.
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
Molecular Signatures Database (MSigDB) in a data frame
Generative Art NFTs from Genomic Data
Sentieon DNAseq
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
🧬 gnomAD Python API is used to obtain data from gnomAD (genome aggregation database).
A web application for interactive visualization and exploratory data analysis of variant call matrices
CellRank's reproducibility repository.
Miscellaneous R script to wrangle data and generate visualizations
Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture
Datastores for reads, not your papa's FASTQ files.
2024 BreedWheat Genomic Selection pipeline
Sentieon DNAscope + Machine Learning Model
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
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