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OrangePomeranian/README.md

Hi, I'm a passionate Bioinformatics student with a keen interest in Data Analysis, Data Science, and Bioinformatics. With a year of experience under my belt, I'm actively seeking opportunities to bring innovative solutions to forward-thinking projects in a dynamic company environment.

I’m great fan of foreign languages (currently working on German 🇩🇪 and Mandarin 🇨🇳 skills), cuisines 🥟 and cultures. I love reading literature in their native language 📖, listen to English and German music (Linkin Park and Rammstein fan here 🎸) - but still open to new foreign experiences 🤩.

Key Skills

  • Programming Languages & Tools: Python, R, SQL, Linux, Command Line, Git, Julia, Docker, Snakemake
  • Bioinformatics: Proficient in NGS data analysis, biostatistics, and familiar with essential databases such as NCBI and GenBank
  • Soft Skills: Teamwork, effective communication, adaptability

Languages

  • Dutch: Limited working proficiency
  • English: Full professional proficiency
  • German: Limited working proficiency
  • Polish: Native

Current Projects

Below is a detailed look at some of the projects I've been involved in, highlighting my skills in bioinformatics and data analysis. Please visit the Projects section on GitHub to explore these works further.

  • Analysis of Genetic Markers for Canine Diseases: Using tools like Plink and SNPassoc to identify SNP markers.
  • Automated Genomic Analysis Pipeline: Employed Snakemake for streamlined processing of genomic data.
  • CHIP-seq for Gene Target Identification: Analyzed gene interactions to understand cellular processes.

Pinned

  1. LIMS_database LIMS_database Public

    Project of Medical Database with the possibility of logging for users and adding new data to base

    PHP

  2. Analiza_Danych_projekt Analiza_Danych_projekt Public

    Finding mutations in genomic data with the use of the chi2 test and Parallel functions in Python and R

    R 1

  3. Bachelor_thesis Bachelor_thesis Public

    The performance of individual CNV detection software and state-of-the-art sequencing. All analyses were performed using the Python and R programming languages.

    Python 1

  4. Master_thesis Master_thesis Public

    Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.

    R 1

  5. Spatial_Analysis Spatial_Analysis Public

    This project conducts spatial analysis on lung cancer tissue using Scanpy and data from 10x Genomics, focusing on preprocessing, quality control, and functional analysis of spatially variable genes…

    Jupyter Notebook 1

  6. Pipeline_with_Snakemake Pipeline_with_Snakemake Public

    Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.

    HTML