A useful python package for working on genomic coordinates.
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Updated
Feb 25, 2021 - Python
A useful python package for working on genomic coordinates.
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
This code compares the theoretical and practical length distributions of fragments.
MAGset is a tool to analyze and compare MAGs of known species
Generate heatmap plots from genomic BigWig data
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
R code in R Markdown used for ucm genomes and genome analysis course
estimation of the genome size for the illumina reads, only for the pre-screening purposes and includes a R function also.
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
MRA, A Novel Multi-head Algorithm to Discover all Tandem Repeats in One Scan of DNA Sequences.
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
Aphrocallistes vastus genome
Create a Bioconductor/R SDK for Arvados
App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.
This repository represents several projects completed in IE HST's MS in Business Analytics and Big Data program Health Analytics Course.
Analysis of input alphabet sequential data
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
Practical and home works in the discipline Bioinformatics.
Optimal AlphaMissense threshold based on VKGL variant classifications
Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5
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