Pinned

1. bcl2fastq2_Pipeline bcl2fastq2_Pipeline Public

   A snakemake-based workflow for converting Illumina's bcl files to fastq files with the option of further downstream analysis (using FastQC, STAR+RSeQC, cutadapt) and encryption via gocryptfs

   Python

2. deep_snake deep_snake Public

   deep_snake - snakemake-based deepconsensus (Pacbio SequelII subreads - to deepconsensus.fastq)

   Python

3. BulkRNASeqGUI BulkRNASeqGUI Public

   A shiny / TCC-GUI based application for users RNASeq data analysis / exploratory plotting

   R 1

4. scRNAseq_Pipeline scRNAseq_Pipeline Public

   A snakemake- and seurat-based scRNA-seq analysis pipeline.

   Python 1

5. circrna_detection circrna_detection Public

   circs_snake : a snakemake-based circRNA detection workflow

   Python 1 1

6. BNG_nanotatoR BNG_nanotatoR Public

   A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data

   R