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kalilamali/README.md

Hi there πŸ‘‹

  • πŸ‘©β€πŸ’» I'm a Bioinformatician working on bacterial genomics.

My stack is:

Python R BASH MatLab SQLite Github Docker Conda Snakemake Visual Studio Code Linux Apple PyTorch Vim Flask Streamlit Jupyter RStudio Bioconductor Pandas Scikit-learn SciPy Latex

Pinned

  1. approval_tests_python_demo approval_tests_python_demo Public

    This is a demo repo for testing in python using ApprovalTests.Python

    Makefile

  2. conda_ci_github_actions_demo conda_ci_github_actions_demo Public

    This is a demo repo for CI and CD for conda environments using GitHub actions.

    Python

  3. Integrons Integrons Public

    Integron analysis tools. Scripts necessary to reproduce the validation of IntFinder (version 1.0).

    Python

  4. drawio_github_demo drawio_github_demo Public

    This a demo repo for diagrams in GitHub using draw.io

    HTML

  5. ssi-dk/BPS_FBI_FSC_VirulenceFinder ssi-dk/BPS_FBI_FSC_VirulenceFinder Public

    Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

    Shell

  6. codespaces-demo codespaces-demo Public

    This is a demo repo for CI and CD using GitHub codespaces and GitHub actions.

    Makefile