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asiort/README.md
  • 👋 Hey there!, I’m Asier Ortega Legarreta @asiort
  • 👀 I’m interested in Bioinformatics, Genomics, Statistics and Machine Learning, and how to combine them to solve biological problems!
  • 💼 I’m currently working in Navarrabiomed, biomedical research centre in the Translational Bioinformatic group as Bioinformatician.
  • 💻 I am currently working on small bioinformatics tools to facilitate data analysis and processing. So far I have developed two scraping tools using Selenium:
    • A tool that allows multiple BLAST searches to be performed in parallel against the NCBI database, from a multiFASTA.
    • A tool that allows to scrape all the results generated with MiGA Online, to infer the taxonomy of our genomes.
    • I am currently developing Shiny apps and R packages (bioconductor) to become more understable complex data, using interactive tools.
  • 📫 You can reach me at asierortega20@gmail.com

Popular repositories

  1. OnlineMultiBLASTqueries OnlineMultiBLASTqueries Public

    Does multiple nucleotidic | aminoacidic BLAST queries in the NCBI BLAST web from a given multiFASTA and writes the output with the results. The queries are parallelized using Threads.

    Python

  2. MiGAscraping MiGAscraping Public

    Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.

    Python

  3. asiort asiort Public

    Presentation

  4. bioinfoExamples bioinfoExamples Public

    An R package with its own functions and examples of bioinformatics analysis for reference.

    R

  5. demo_cf_screening demo_cf_screening Public

    Demo-APP_CF_screening

    R

  6. scNextPlot scNextPlot Public

    Forked from damouzo/scNextPlot

    R