Personal Cancer Genome Reporter (PCGR)

An open source openEHR server

面向中文电子病历的命名实体识别

MNE-CPP: A Framework for Electrophysiology

Characterization of Germline variants

Clinically Adapted Model Enhanced from LLaMA

Medkey Hospital Information System main repository: Practice Management for Practicioners & Hospitals, EHR, Patient Engagement

Mutation Identification Pipeline. Read the latest documentation:

Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.

A collaborative learning framework for empowering biomedical research

A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…

Integrating AI to Clinical Workflow

Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare NLP tasks.

We jailbreak your medical records and genomics data. For free.

Reconstruction and analysis of viral and host genomes at multi-organ level

Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …