GenCoor (Genomic Coordinates) is a convenient Python3 package for loading, manipulating and analyzing genomic coordinates of any given genome.
It provides:
- a fundamental object for any genomic coordinates
- many useful functions for manipulating those genomic coordinates
- optimizing performance by Cython
- integration of the genome annotation files
- possibility to develop the customized tools for your purpose
- GenCoorSet: Load, manipulating and save the genomic coordinates.
- Annotation: Load and filter the genome annotation file (GTF format) as well as outputting the customized genomic coordinates.
** Load a BED file
** Get all protein coding genes from human genome
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