🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
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Updated
Dec 31, 2023 - Perl
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Genome assembly evaluation tool
Software for prediction of plasmid sequences in metagenomic assemblies
De novo genome assembly and multisample variant calling
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
(Meta-)genome screening for functional and natural product gene sequences
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
✨🧬 Refined binning of metagenomic contigs using assembly graphs
Wally: Visualization of aligned sequencing reads and contigs
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Simulate metagenomic short reads from one or more populations.
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints
An ensemble of plasmid classification tools
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