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Ex Center for Algorithmic Biotechnology

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spades spades Public

SPAdes Genome Assembler

C++ 671 131
quast quast Public

Genome assembly evaluation tool

AMPL 367 73

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Showing 10 of 30 repositories

spades Public
SPAdes Genome Assembler

C++ 671 131 225 2 Updated May 6, 2024
IsoQuant Public
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Python 119 11 56 4 Updated May 6, 2024
nerpa Public

C++ 10 3 0 3 Updated Mar 15, 2024
quast Public
Genome assembly evaluation tool

AMPL 367 73 75 3 Updated Sep 8, 2023
rnaquast Public
Quality assessment of de novo transcriptome assemblies from RNA-Seq data

Python 17 6 7 0 Updated Aug 1, 2023
metarna Public

Python 0 0 0 2 Updated Jul 6, 2023
quast-website Public
Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

HTML 4 2 0 0 Updated Apr 25, 2023
orf-search Public
ORF search on assembly graphs

Python 5 2 0 0 Updated Apr 12, 2023
metaGT Public
Pipeline for metagenome and metatranscriptome joint assembly

Nextflow 15 MIT 0 2 0 Updated Mar 3, 2023
VerityMap Public

C++ 26 GPL-3.0 5 9 1 Updated Feb 22, 2023

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