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Pinned

  1. VirStrain VirStrain Public

    An RNA virus strain-level identification tool for short reads.

    Python 19 1

  2. StrainScan StrainScan Public

    High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

    Python 32 4

  3. AnnoSINE_v2 AnnoSINE_v2 Public

    Forked from oushujun/AnnoSINE_v2

    Accelerating de novo SINE annotation in plant and animal genomes

    Python 1

  4. MetaComp MetaComp Public

    MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.

    HTML 3 1

  5. StrainDetect StrainDetect Public

    StrainDetect is an online viral strain-level analysis tool based on VirStrain.

    Vue 1

  6. StrainAMR StrainAMR Public

    A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features with bacterial strain genomes