Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Updated
Feb 26, 2024 - R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Gene set variation analysis
CAusal Reasoning for Network Identification with integer VALue programming in R
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
From RNA-seq raw reads to enriched pathways by DEGs
Lightweight Iterative Gene set Enrichment in R
Cancer-dedicated gene set interpretation
A Python package for benchmarking pathway database with functional enrichment and classification methods
Explore biomolecular pathways in Reactome from the command-line or a Python script
Single sample pathway analysis tools for omics data
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
A Python package for metabolite enrichment analysis.
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
R package for de novo pathway enrichment using KeyPathwayMiner
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder
Python and R programs used in the identification of repurposed drugs against viruses responsible for causing epidemics/pandemics
Just another wrapper for pathway analysis using MAGMA
A compilation of functions and scripts I've created to streamline analysis of phosphoproteomic data in Python!
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
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