Discussions

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  Enrich against a custom .gmt

  apelin20 started Apr 24, 2024 in Ideas · Closed

  

  

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  Single cell RNAseq

  ggonnella asked Feb 19, 2024 in Q&A · Closed · Answered

  

  

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  Is it possible to use Reactome terms of mouse for the search?

  fengx90 asked Jul 21, 2023 in Q&A · Closed · Unanswered

  

  

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  problem with my own data

  kratzera asked May 27, 2023 in Q&A · Closed · Answered

  

  

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  Normalized effect size to tell the direction of enrichment

  eclarsen-10 asked Feb 9, 2023 in Q&A · Unanswered

  

  

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  RA_outpu error

  Shivani8898 asked Oct 22, 2022 in Q&A · Unanswered

  

  

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  Pathway score calculations?

  junli1988 asked Aug 25, 2022 in Q&A · Answered

  

  

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  Legend overlapping with network nodes in term visualizations? How to resolve the overlap issues?

  junli1988 asked Aug 23, 2022 in Q&A · Answered

  

  

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  Mice RNA-seq pathway analysis

  samanehgholami started Jul 27, 2022 in General

  

  

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  Filtering by the number of occurences

  darco98 asked Jul 25, 2022 in Q&A · Answered

  

  

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  version for database

  cristanchoa started Jul 21, 2022 in General

  

  

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  Not sure my input table is good for the analysis

  cleopatraface asked Jun 14, 2022 in Q&A · Answered

  

  

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  Is it possible to specify a minimum gene number presented in pathways for enrichement?

  fengx90 asked Apr 13, 2022 in Q&A · Answered

  

  

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  Is it possible to increase the gene label size in Combined Results Graph?

  fengx90 asked Mar 3, 2022 in Q&A · Answered

  

  

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  "None of the genes were in the PIN"

  Jmperez2080 asked Feb 2, 2022 in Q&A · Answered

  

  

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  Could we use the q value instead of the p value?

  powerhorse1986 asked Dec 22, 2021 in Q&A · Answered

  

  

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  Question about the red and green colors on the KEGG pictures

  powerhorse1986 asked Nov 9, 2021 in Q&A · Unanswered

  

  

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  Issue with Isoform ID

  daacarri asked Oct 30, 2021 in Q&A · Unanswered

  

  

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  Combined_res question

  daacarri asked Sep 24, 2021 in Q&A · Answered

  

  

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  Result of running pathfindR is "NAs introduced by coercion"

  obearap asked Sep 13, 2021 in Q&A · Answered

  

  

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  parameters for active subnetowrk search

  safrikDut started Aug 4, 2021 in General

  

  

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  Error in term_gene_heatmap function

  safrikDut started Jun 7, 2021 in General

  

  

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  Error in get_pin_file options

  adolfoisla asked Jun 6, 2021 in Q&A · Answered

  

  

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  Running pathfindR generates an error message in file(con, "wb")

  elouiseek asked May 6, 2021 in Q&A · Unanswered

  

  

  

  

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  output enriched terms

  safrikDut started Apr 19, 2021 in General

  

  

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