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hamidghaedi/README.md

Hi there 👋

My name is Hamid and I am a genomic data analyst

  • 🔭 Currently working on single-cell OMICS
  • 🌱 I’m learning neural networks (CNN, RNN, transformers)
  • 👯 I'd be happy to collaborate on ML based projects in genomics
  • 💬 Ask me about "how to" perform genomic data analysis in R/Python
  • 📫 How to reach me: Twitter @HaGhaedi
  • 😄 Pronouns: He/Him
  • ⚡ Fun fact: Huge fan of wildlife documentaries!

Pinned

  1. Enrichment-Analysis Enrichment-Analysis Public

    From RNA-seq raw reads to enriched pathways by DEGs

    28 14

  2. scRNA_seq-analysis scRNA_seq-analysis Public

    scRNA analysis of public dataset on bladder cancer

    8 3

  3. scRNA_cell_annotation scRNA_cell_annotation Public

    Assigning cell labels w/o ref data (Tabula Sapiens)

  4. scRNA_velocity_analysis scRNA_velocity_analysis Public

    scRNA velocity analysis using Seurat, velocyto and scvelo

  5. scRNA-cell-cell-communication-analysis scRNA-cell-cell-communication-analysis Public

    A repo on cell-cell interaction inference in scRNA dataset

    R

  6. sequencing_benchmark_datasets sequencing_benchmark_datasets Public

    A repo on datasets used in Sequencing benchmarked study, Nat Biotech, September 2021