The codebase of the OpenMS project

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

LC-MS data processing tool for large-scale metabolomics experiments.

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Infer metabolic directions from moment differences of mass-weighted intensity distributions

In silico chemical library engine for high-accuracy chemical property prediction

A Python 3 implementation of orthogonal projection to latent structures

A deep learning toolkit for mass spectrometry

sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java

TidyMS: Tools for working with MS data in untargeted metabolomics

Public Workflows at GNPS

Compare different differential abundance and expression methods

CoreMS is a comprehensive mass spectrometry software framework

Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

Visualization and analysis platform for metabolic data and network pattern recognition

Documentation for GNPS and related tools as written in mkdocs

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles