Here are
22 public repositories
matching this topic...
This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
A Bio2BEL package for converting the Mouse Genome Informatics Database (MGI) to BEL
Updated
Nov 13, 2019
Python
Updated
Nov 13, 2019
Python
A Bio2BEL package for converting Entrez and HomoloGene to BEL
Updated
Mar 11, 2020
Python
Java code to download genomes and orthologues from Ensembl
Updated
Apr 14, 2020
Java
The Docker integration for the r2g project.
Updated
Aug 10, 2020
Dockerfile
Research compendium for Viscardi et al, 2020.
Collection of scripts for gene age sorting and multi-omics data mining and analysis
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly
Updated
Apr 2, 2021
Python
A stand-alone tool for evaluating simple statistics of orthologs
Updated
Sep 20, 2021
Python
Dynamic core orthologs compilation tool
Updated
Feb 10, 2022
Python
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
Workflow for identifying and classifying homologous gene/protein sequences
Updated
May 26, 2023
Python
Tree-based orthology inference with functionality for reducing contamination
Updated
Sep 4, 2023
Python
a broadly applicable tool for automated gene identification and retrieval
Updated
May 3, 2024
Python
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Updated
May 23, 2024
Python
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Updated
Dec 20, 2023
Python
Feature-aware Directed OrtholoG search
Updated
Apr 22, 2024
Python
a python package for automated generation of phylogenetic trees from genbank files
Updated
Apr 25, 2024
Python
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