Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
-
Updated
May 21, 2024 - Python
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
SPAdes Genome Assembler
This is a template for all assembly projects. Please read the instructions below on how to use it.
Simple bacterial assembly and annotation pipeline
Scripts associated with kakī (*Himantopus novaezelandiae*) genome assembly using HiFi data
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
🌳 Human ancestry inference from genomic data
Implementation of ToL genome assembly workflows
Pipeline for performing routine genome assembly
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
Scripts for Hill et al. (in review) 🌾
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
The genome of the contractile demosponge Tethya wilhelma
from protein alignments to deep learning preparatory.
Scripts and data regarding Vampyrellida genomics.
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Fast and accurate de novo assembler for long reads
Pipeline for the identification of (coding) gene structures in draft genomes.
A program for assessing the T2T genome continuity
Add a description, image, and links to the genome-assembly topic page so that developers can more easily learn about it.
To associate your repository with the genome-assembly topic, visit your repo's landing page and select "manage topics."