A Python library to visualize and analyze long-read transcriptomes
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Updated
Mar 14, 2024 - Jupyter Notebook
A Python library to visualize and analyze long-read transcriptomes
De novo clustering of long transcript reads into genes
Long RNA-seq analysis workflow
Clair3-RNA - a long-read small variant caller for RNA sequencing data
A collection of scripts for our PacBio paper
A collection of scripts for our PacBio paper
Iso-seq and Kallisto integration
Genome assembly steps (Haliotis asinina)
a complete workflow that can be dockerized for the long read assembly, it allows for the genome assembly update as well as it allows for the assembly from the start. if you have the illumina reads it allows for the genome mapping also
A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)
Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files
Inter-sample analysis of SQANTI classifications
Build highly accurate transcripts from long-read RNA data
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments
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