Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
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Updated
May 7, 2021 - Jupyter Notebook
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
Sea lion urine comparison with spectral counting.
Config files for my GitHub profile.
Perform RNA-seq data analysis with edgeR package of bioconductor
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
Transcriptome Analysis of Heat and Drought-Stressed Wheat
A large-scale spectral counting data analysis using PAW pipeline, edgeR, R, and Jupyter notebooks
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.
RNA sequencing processing and analysis to find differential expression
Various tutorials on how to analyse transcriptomic data.
Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
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