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pwilmart/README.md

Proteomics education, tools, and applications

Check out Start_Here for a roadmap to the available content. I have blogs here on some proteomics topics from the simple to the "I can't believe someone wrote a blog post on that". The OHSU proteomics core also has a GitHub account with some additional content.

@pwilmart@scicomm.xyz on Mastodon
@pwilmarth on Twitter

Phil Wilmarth
July 12, 2020

Pinned

  1. Start_Here Start_Here Public

    Navigation links (and brief descriptions) to my repositories.

    8

  2. TMT_analysis_examples TMT_analysis_examples Public

    Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.

    21 4

  3. IRS_validation IRS_validation Public

    Analysis of technical replicate channels to more fully validate the internal reference scaling (IRS) method.

    Jupyter Notebook 6

  4. IRS_normalization IRS_normalization Public

    An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.

    Jupyter Notebook 15 9

  5. PAW_pipeline PAW_pipeline Public

    A Comet-based, best practices proteomics pipeline.

    Python 33 9

  6. fasta_utilities fasta_utilities Public

    Utilities for downloading and managing protein FASTA files.

    Python 8 7