Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
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Updated
Aug 18, 2021 - Python
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.
RNA-seq workflow: gene-level exploratory analysis and differential expression.
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