Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
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Updated
May 17, 2024 - Nextflow
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
Environmental and genealogical signals on DNA methylation in a widespread apomictic dandelion lineage
A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.
Arioc: GPU-accelerated DNA short-read alignment
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Snakemake workflow for the processing of EMseq data
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
Pipeline for BS-Seq data based on snakemake
bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Differential methylation: Easy, Fast, Identification and ANnoTation
Analyze Whole Genome Bi-Sulfite Sequencing for Grape evolution in response to grafting
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
Bisulfite Sequencing Virus integration Finder
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
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