Nextflow pipeline for analysis of direct RNA Nanopore reads
-
Updated
Mar 23, 2023 - Nextflow
Nextflow pipeline for analysis of direct RNA Nanopore reads
A collection of unexpected challenges and learnings with nextflow and nf-core.
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
NeoFlow: a proteogenomics pipeline for neoantigen discovery
Nextflow pipeline for genome annotation of protein-coding genes
A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Flujos de trabajos desarrollados y automatizados en el INMEGEN para el procesamiento de datos genómicos y transcriptómicos.
Template for creating Nextflow DSL2 pipelines
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
Python library to execute batches of jobs using nextflow.
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
A Nextflow pipeline to experiment with DSL2 + Zero Mess
Nextflow pipeline for extracting and counting clonal barcodes
Nextflow wrapper for the dragonflye assembler, with additional QC
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.
This is a nextflow pipeline for variant calling of low frequency variants in panel/WES high-throughput data.
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
Add a description, image, and links to the nextflow-pipeline topic page so that developers can more easily learn about it.
To associate your repository with the nextflow-pipeline topic, visit your repo's landing page and select "manage topics."