Issues: nf-core/methylseq
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bwameth pipeline skipping all bwameth steps when --fasta, --fasta_index, and --bwa_meth_index are provided.
bug
Something isn't working
#396
opened Apr 5, 2024 by
drothen15
Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency
enhancement
New feature or request
#394
opened Apr 1, 2024 by
pdemko
Latest template merge completely broke dev branch (on AWS + Fusion)
bug
Something isn't working
#392
opened Mar 27, 2024 by
FelixKrueger
--rrbs and --emseq parameter and argument usage
enhancement
New feature or request
#389
opened Mar 20, 2024 by
deep-buddingcoder
CG CHG and CHH with --comprehensive flag using bismark workflow
enhancement
New feature or request
#388
opened Mar 13, 2024 by
MMJBerger
samplesheet input is not detecting entire values in sample column
bug
Something isn't working
#378
opened Feb 9, 2024 by
wvictor14
Support for NuGEN Ovation RRBS
enhancement
New feature or request
#376
opened Jan 19, 2024 by
jma1991
Add CX report support from bismark_methylation_extractor
enhancement
New feature or request
good first issue
Good for newcomers
#372
opened Jan 9, 2024 by
Tintest
--skip_qualimap parameter to disable qualimap
enhancement
New feature or request
#367
opened Jan 3, 2024 by
adamrtalbot
Missing type field in nextflow_schema.json file
bug
Something isn't working
#361
opened Dec 1, 2023 by
scoughlan2
Error when providing a bwameth index (MethylSeq v2.4.0 and v2.5.0)
bug
Something isn't working
#353
opened Oct 25, 2023 by
bioinfoMMS
bwameth index creation fails
bug
Something isn't working
#352
opened Oct 23, 2023 by
FutureFellwalker
Pipeline unable to recognise samples processed across multiple lanes
bug
Something isn't working
#351
opened Oct 22, 2023 by
jma1991
Something ain't right with that template...
bug
Something isn't working
#309
opened May 16, 2023 by
edmundmiller
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