Conda recipes for the bioconda channel.
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Updated
May 8, 2024 - Shell
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Conda recipes for the bioconda channel.
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
An R package for reproducible and automated ADMIXTOOLS analyses
Infectious Disease Sequencing Platform
Aggregate results from bioinformatics analyses across many samples into a single report.
An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.
vcfpp.h + htslib + Rcpp = fast VCF/BCF https://doi.org/10.1093/bioinformatics/btae049
An R package to investigate the RNA mobilome & population-scale changes.
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Methods for Biological Data Workshop (UW-Madison)
Therapeutics Commons: Artificial Intelligence Foundation for Therapeutic Science
COmbinatorial Padlock-Probe-Amplified Fluorescence In Situ Hybridization
Workflows to investigate integration site distributions in R
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
A structural variation pipeline for short-read sequencing
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.