An analysis and visualization platform for 'omics data
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Updated
Apr 26, 2024 - Python
An analysis and visualization platform for 'omics data
An open-source toolkit for large-scale genomic analysis
Tools to work with variant call format files
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
Application of pan-genome for population
A library for working with phylogenetic and population genetic data.
Rapid population clustering with autoencoders
Population genetic simulations in R 🌍
LDlinkR
feature-based deep learning for the identification of selective sweeps
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Causal Mixture Model for GWAS summary statistics
deep learning prediction of geographic location from individual genome sequences
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