New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
perf: autobump bio/gatk/variantfiltration #1340
Merged
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Automatically approving successfull autobump
tdayris
pushed a commit
to tdayris/snakemake-wrappers
that referenced
this pull request
May 11, 2023
Automatic update of bio/gatk/variantfiltration. Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
johanneskoester
pushed a commit
that referenced
this pull request
May 13, 2023
🤖 I have created a release \*beep\* \*boop\* --- ## [1.30.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.29.0...v1.30.0) (2023-05-12) ### Features * add memory inference to samtools sort ([#1208](https://www.github.com/snakemake/snakemake-wrappers/issues/1208)) ([d70a806](https://www.github.com/snakemake/snakemake-wrappers/commit/d70a80650c640ab37e21690bd9c90dc581d2ec4e)) * deeptools bamcoverage ([#1237](https://www.github.com/snakemake/snakemake-wrappers/issues/1237)) ([ee2413b](https://www.github.com/snakemake/snakemake-wrappers/commit/ee2413b7f4e5576692330821f3cdd8829d731144)) * deeptools plotcoverage ([#1241](https://www.github.com/snakemake/snakemake-wrappers/issues/1241)) ([d08e4c6](https://www.github.com/snakemake/snakemake-wrappers/commit/d08e4c6908347ff979ff512f6523368ed9fc0df2)) * DeseqDataSet from multiple input ([#1326](https://www.github.com/snakemake/snakemake-wrappers/issues/1326)) ([25d8a07](https://www.github.com/snakemake/snakemake-wrappers/commit/25d8a076bc6830bfcf58d7a5999b68a790879f9a)) * Gffread ([#1291](https://www.github.com/snakemake/snakemake-wrappers/issues/1291)) ([d613ddf](https://www.github.com/snakemake/snakemake-wrappers/commit/d613ddffa7f78f5697e836e71ce2e51f232c1884)) * Salmon-Tximport meta-wrapper ([#1270](https://www.github.com/snakemake/snakemake-wrappers/issues/1270)) ([1e31da2](https://www.github.com/snakemake/snakemake-wrappers/commit/1e31da29769eebefdff470ae24598eb479547bca)) ### Bug Fixes * auto memory calculation ([#1210](https://www.github.com/snakemake/snakemake-wrappers/issues/1210)) ([b08081f](https://www.github.com/snakemake/snakemake-wrappers/commit/b08081fc066b10040fcd94a8f9fd1b70099a6f54)) * ensembl annotation GRCh37 gft release ([#1296](https://www.github.com/snakemake/snakemake-wrappers/issues/1296)) ([d5be001](https://www.github.com/snakemake/snakemake-wrappers/commit/d5be001cfdd5cd85fdbd19abe15de43310f9bfed)) * fixed bug when formatting string in GATK denoisereadcounts ([#1343](https://www.github.com/snakemake/snakemake-wrappers/issues/1343)) ([8cc5d91](https://www.github.com/snakemake/snakemake-wrappers/commit/8cc5d91f0b459ef18d461367a449c9bf5c901571)) ### Performance Improvements * autobump bio/bcftools/call ([#1349](https://www.github.com/snakemake/snakemake-wrappers/issues/1349)) ([064d4a4](https://www.github.com/snakemake/snakemake-wrappers/commit/064d4a469e8a3be063c7ac2b4916127c1f4b9abf)) * autobump bio/bcftools/reheader ([#1362](https://www.github.com/snakemake/snakemake-wrappers/issues/1362)) ([bc4bb1d](https://www.github.com/snakemake/snakemake-wrappers/commit/bc4bb1deb95a5cab588c34b55e03496a5242dcf3)) * autobump bio/bcftools/stats ([#1361](https://www.github.com/snakemake/snakemake-wrappers/issues/1361)) ([444b198](https://www.github.com/snakemake/snakemake-wrappers/commit/444b198e0a97483ce66011a0cb022166d6d45ed2)) * autobump bio/bedtools/genomecov ([#1351](https://www.github.com/snakemake/snakemake-wrappers/issues/1351)) ([f39d37d](https://www.github.com/snakemake/snakemake-wrappers/commit/f39d37dd38dc6a1e672b901278cf8774a132f4c2)) * autobump bio/bedtools/merge ([#1348](https://www.github.com/snakemake/snakemake-wrappers/issues/1348)) ([46ba353](https://www.github.com/snakemake/snakemake-wrappers/commit/46ba35317bd292816fbc833ca43b2bc50485a0a9)) * autobump bio/bedtools/sort ([#1357](https://www.github.com/snakemake/snakemake-wrappers/issues/1357)) ([e17cb5a](https://www.github.com/snakemake/snakemake-wrappers/commit/e17cb5a405d0d770749969cd89a0bcc58179f292)) * autobump bio/bismark/bam2nuc ([#1341](https://www.github.com/snakemake/snakemake-wrappers/issues/1341)) ([ce2b39e](https://www.github.com/snakemake/snakemake-wrappers/commit/ce2b39e65752a5088088c65d67abe3fa4d01a0dc)) * autobump bio/bismark/bismark2report ([#1334](https://www.github.com/snakemake/snakemake-wrappers/issues/1334)) ([d497124](https://www.github.com/snakemake/snakemake-wrappers/commit/d497124a689d436169dd360e674bd7af7bfc7fa9)) * autobump bio/bowtie2/align ([#1356](https://www.github.com/snakemake/snakemake-wrappers/issues/1356)) ([0e6cc68](https://www.github.com/snakemake/snakemake-wrappers/commit/0e6cc68ed2499215903a1adb1e83c883f6d73277)) * autobump bio/busco ([#1359](https://www.github.com/snakemake/snakemake-wrappers/issues/1359)) ([41f1185](https://www.github.com/snakemake/snakemake-wrappers/commit/41f1185ee23cd2810022510a2d89f4ea39212a44)) * autobump bio/bwa/samxe ([#1335](https://www.github.com/snakemake/snakemake-wrappers/issues/1335)) ([8042216](https://www.github.com/snakemake/snakemake-wrappers/commit/80422161ea03b1d8a1f513f7562b7cbe6667a952)) * autobump bio/deeptools/plotfingerprint ([#1345](https://www.github.com/snakemake/snakemake-wrappers/issues/1345)) ([39f88b7](https://www.github.com/snakemake/snakemake-wrappers/commit/39f88b73d148b02436d7476642ca24b02201e6d6)) * autobump bio/gatk/applybqsr ([#1339](https://www.github.com/snakemake/snakemake-wrappers/issues/1339)) ([ec62a41](https://www.github.com/snakemake/snakemake-wrappers/commit/ec62a41f3ece28922bc9a35edec5c44997006320)) * autobump bio/gatk/splitncigarreads ([#1350](https://www.github.com/snakemake/snakemake-wrappers/issues/1350)) ([7a7eb1e](https://www.github.com/snakemake/snakemake-wrappers/commit/7a7eb1e46b65843a295055c6cd74fe49ee68466c)) * autobump bio/gatk/variantfiltration ([#1340](https://www.github.com/snakemake/snakemake-wrappers/issues/1340)) ([d108c9c](https://www.github.com/snakemake/snakemake-wrappers/commit/d108c9c0adc28b8b7bac14b418f1f79df91a90a5)) * autobump bio/manta ([#1342](https://www.github.com/snakemake/snakemake-wrappers/issues/1342)) ([a23858a](https://www.github.com/snakemake/snakemake-wrappers/commit/a23858aa5e6980e559ee8cb02f0a54208af9eef5)) * autobump bio/minimap2/aligner ([#1329](https://www.github.com/snakemake/snakemake-wrappers/issues/1329)) ([45c53eb](https://www.github.com/snakemake/snakemake-wrappers/commit/45c53eba9041a28745c2d678638827b0b2537667)) * autobump bio/open-cravat/run ([#1330](https://www.github.com/snakemake/snakemake-wrappers/issues/1330)) ([fc82508](https://www.github.com/snakemake/snakemake-wrappers/commit/fc82508898e6de6c5f673f1a3044bda7fe02d656)) * autobump bio/picard/addorreplacereadgroups ([#1333](https://www.github.com/snakemake/snakemake-wrappers/issues/1333)) ([d273596](https://www.github.com/snakemake/snakemake-wrappers/commit/d27359682dbe2a4c411971e09c72079a9d803dfb)) * autobump bio/picard/collectinsertsizemetrics ([#1352](https://www.github.com/snakemake/snakemake-wrappers/issues/1352)) ([ae1e2bd](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1e2bd62f7a6683c495abc70cd9dd1773b683f4)) * autobump bio/rasusa ([#1353](https://www.github.com/snakemake/snakemake-wrappers/issues/1353)) ([3c41241](https://www.github.com/snakemake/snakemake-wrappers/commit/3c4124152e9b49bd02f944707e47517d6e7826dc)) * autobump bio/samtools/fastx ([#1347](https://www.github.com/snakemake/snakemake-wrappers/issues/1347)) ([d6e6329](https://www.github.com/snakemake/snakemake-wrappers/commit/d6e63291192027c7c4c994d8d5e2dee6f727b5cb)) * autobump bio/seqkit/fx2tab ([#1338](https://www.github.com/snakemake/snakemake-wrappers/issues/1338)) ([53922ca](https://www.github.com/snakemake/snakemake-wrappers/commit/53922ca8c2a7ad2da5c17a39fb98e724dff56df5)) * autobump bio/snpeff/annotate ([#1363](https://www.github.com/snakemake/snakemake-wrappers/issues/1363)) ([9ba0b3d](https://www.github.com/snakemake/snakemake-wrappers/commit/9ba0b3ddd02f784df8eddd203a5619362c88f36f)) * autobump bio/snpeff/download ([#1358](https://www.github.com/snakemake/snakemake-wrappers/issues/1358)) ([2c5a385](https://www.github.com/snakemake/snakemake-wrappers/commit/2c5a385ad1d499d183a6075d1c274d7beab14621)) * autobump bio/sourmash/compute ([#1360](https://www.github.com/snakemake/snakemake-wrappers/issues/1360)) ([1ec19c2](https://www.github.com/snakemake/snakemake-wrappers/commit/1ec19c22df58905271b50399b8b1d83e94801fe3)) * autobump bio/sra-tools/fasterq-dump ([#1355](https://www.github.com/snakemake/snakemake-wrappers/issues/1355)) ([d1118bd](https://www.github.com/snakemake/snakemake-wrappers/commit/d1118bd4f59c1315b99539c8b2d99bb1ac86326c)) * autobump bio/tabix/index ([#1336](https://www.github.com/snakemake/snakemake-wrappers/issues/1336)) ([dfab9c6](https://www.github.com/snakemake/snakemake-wrappers/commit/dfab9c6aa5e50596d7348553d8414c534130f5f8)) * autobump bio/vembrane/table ([#1337](https://www.github.com/snakemake/snakemake-wrappers/issues/1337)) ([953c0dc](https://www.github.com/snakemake/snakemake-wrappers/commit/953c0dcdedc8ebbaff96e139c93d5c2aef3ad87f)) * autobump bio/vep/plugins ([#1346](https://www.github.com/snakemake/snakemake-wrappers/issues/1346)) ([887ba11](https://www.github.com/snakemake/snakemake-wrappers/commit/887ba11f0be215ddf0110d6ba31de4a0eb93056c)) * autobump bio/vg/sim ([#1332](https://www.github.com/snakemake/snakemake-wrappers/issues/1332)) ([91574fd](https://www.github.com/snakemake/snakemake-wrappers/commit/91574fd8795d55ff9e60b35f884c4f2cd7956b54)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
tdayris
pushed a commit
to tdayris/snakemake-wrappers
that referenced
this pull request
Jul 5, 2023
Automatic update of bio/gatk/variantfiltration. Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Automatic update of bio/gatk/variantfiltration.