Issues: snakemake/snakemake-wrappers
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NameError: name 'PosixPath' is not defined
bug
Something isn't working
#2793
opened Apr 6, 2024 by
odetteg
the output files generated by using STAR in snakemake-wrappers should be more comprehensive.
enhancement
New feature or request
#2756
opened Mar 19, 2024 by
zhongzheng1999
Describe in the documentation of STAR wrapper how to use shared memory
enhancement
New feature or request
#2680
opened Feb 19, 2024 by
moxgreen
deepvariant
: conda environment not installable
bug
#2296
opened Nov 7, 2023 by
votti
Wrappers for Google Batch
enhancement
New feature or request
Stale
#1875
opened Oct 16, 2023 by
vsoch
bwa-memx_index meme wrapper expects specific file name?
bug
Something isn't working
#1344
opened May 11, 2023 by
Phlya
Mutect2 issue that raises false positive calls by 20%
enhancement
New feature or request
#991
opened Feb 1, 2023 by
tdayris
Issue with TrimmomaticPE log reporting; incompatible with MultiQC
bug
Something isn't working
#961
opened Dec 6, 2022 by
oligomyeggo
Error in snakemake wrapper goes not to log file
bug
Something isn't working
#885
opened Nov 17, 2022 by
SilasK
BUG: BWA-MEM wrapper - Passing command line argument -O in extra triggers wrapper cancel
bug
Something isn't working
#624
opened Oct 25, 2022 by
KuechlerO
Example Snakemake rule wrapper attribute for DADA2_QUALITY_PROFILES is incorrect
bug
Something isn't working
#622
opened Oct 25, 2022 by
mtmcgowan
security considerations for wrapper retrieval
bug
Something isn't working
#478
opened Apr 24, 2022 by
FliesLikeABrick
vep download cache: Add cache url
enhancement
New feature or request
Stale
#366
opened May 24, 2021 by
lczech
vep download cache vs vep annotate
bug
Something isn't working
Stale
#365
opened May 24, 2021 by
lczech
using ensemblgenomes for non-vertebrate references
enhancement
New feature or request
#341
opened Apr 17, 2021 by
RvV1979
wrappers for hap.py and dipcall
enhancement
New feature or request
#294
opened Feb 27, 2021 by
nate-d-olson
gatk variantrecalibrator wrapper does not specify properly the resources path
bug
Something isn't working
#280
opened Jan 12, 2021 by
alejocrojo09
Varscan/Snpeff wrappers are incompatible - please add warning to documentation
bug
Something isn't working
#275
opened Dec 3, 2020 by
moldach
utility functions for general-purpose wrapper setup (e.g. JVM memory option handling)
enhancement
New feature or request
#235
opened Oct 20, 2020 by
dlaehnemann
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