Popular repositories
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snakemake-wrappers
snakemake-wrappers PublicThis is the development home of the Snakemake wrapper repository, see
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snakemake-github-action
snakemake-github-action PublicA Github action for running a Snakemake workflow
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snakemake-workflow-catalog
snakemake-workflow-catalog PublicA statically generated catalog of available Snakemake workflows
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snakedeploy
snakedeploy Publicdeploy a snakemake pipeline directly from version control (under development)
Repositories
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- snakemake-executor-plugin-googlebatch Public
Snakemake executor plugin for Google Batch (under development)
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- snakemake-storage-plugin-http Public
Snakemake storage plugin for donwloading input files from HTTP(s).
- snakemake-storage-plugin-fs Public
A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync.
- snakemake-executor-plugin-slurm Public
A Snakemake executor plugin for submitting jobs to a SLURM cluster