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30 Open 117 Closed
30 Open 117 Closed
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Issues list

raise an error/warning if chromosome names in .chrom.sizes and bwa index differ too much
#235 opened Apr 10, 2024 by golobor
most likely due to a circular import
#234 opened Apr 9, 2024 by stephrom
Wording in pairtools parse2 for --max-insert-size
#232 opened Apr 1, 2024 by bskubi
Memory overconsumption/leak (?) in pairtools restrict
#228 opened Mar 27, 2024 by bskubi
parse vs parse2 difference in default behavior for --flip?
#227 opened Mar 27, 2024 by bskubi
All pairs are corrupt ("XX")
#221 opened Mar 23, 2024 by lu-r-lu
6
stats redesign
#216 opened Mar 17, 2024 by golobor
2
Why reading using pipes rather than another method?
#210 opened Mar 13, 2024 by gdolsten
1
There is no instruction on how to test the project.
#208 opened Feb 25, 2024 by Unique-Usman
pipe error with bwa-mem2.avx512bw (2.2.1)
#207 opened Feb 18, 2024 by pashapu43
1
warning [E::idx_find_and_load] Could not retrieve index file for
#205 opened Jan 24, 2024 by CCCKW
9
'xcats' positional argument error in coverage_by_chrom
#197 opened Dec 19, 2023 by laramiemckenna
4
Parse2 clarification
#193 opened Nov 30, 2023 by NMaziak
running pairtools merge sequentially produces circular dependencies
#188 opened Oct 18, 2023 by jiangshan529
1
pairtools split - float mapQ value
#182 opened Jul 13, 2023 by nservant
2
multiqc section of walkthrough enhancement
#174 opened Apr 7, 2023 by gfudenberg
1
pairtools cov CLI
#172 opened Feb 20, 2023 by agalitsyna
P(s) convergence point in stats
#164 opened Nov 21, 2022 by Phlya
python API docs enhancement
#163 opened Nov 18, 2022 by Phlya
3 tasks
1
pairtools parsing engine abstraction
#156 opened Nov 9, 2022 by agalitsyna
1
OSX support
#151 opened Nov 8, 2022 by agalitsyna
2
post-v1.0.0 proposals and issues (header post)
#139 opened Aug 24, 2022 by agalitsyna
3 of 13 tasks
total_single_sided_mapped contains Pair types help wanted
#112 opened Feb 12, 2022 by wbszhu
type of UU (unique-unique) is close to each other help wanted
#104 opened Jun 7, 2021 by wbszhu
Fragment-level analysis enhancement
#68 opened May 18, 2018 by Phlya
41
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