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Welcome to Open2C!

Open2C is a community that develops and maintains open-source tools for 3D chromosome biology and genomic data science, primarily in Python.

Here's how to get started:

📢 Attention ☀️ Google Summer of Code 2024 ☀️ candidates:

  • Join us on Slack
  • Check out our project ideas page
  • Fill out our intake survey by March 10th (we will consider late responses until March 15th)

Pinned

  1. cooler cooler Public

    A cool place to store your Hi-C

    Python 188 53

  2. cooltools cooltools Public

    The tools for your .cool's

    Jupyter Notebook 120 49

  3. pairtools pairtools Public

    flexible suite of CLI tools for contact extraction (.pairs) from sequencing data (Hi-C, Micro-C and other chromosome capture methods)

    Python 84 35

  4. bioframe bioframe Public

    Genomic Interval Operations on Pandas DataFrames

    Python 150 25

  5. distiller-nf distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 80 26

  6. polychrom polychrom Public

    Chromosome polymer simulations and in silico capture experiments

    Python 42 17

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Showing 10 of 27 repositories

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