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Memory overconsumption/leak (?) in pairtools restrict #228

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bskubi opened this issue Mar 27, 2024 · 0 comments
Open

Memory overconsumption/leak (?) in pairtools restrict #228

bskubi opened this issue Mar 27, 2024 · 0 comments

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@bskubi
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bskubi commented Mar 27, 2024

I'm using pairtools restrict to label restriction fragments. When I include this step in my pipeline, I notice mounting consumption of swap memory that grows past the amount available on my machine (2Gb) and then causes the pipeline to fail. When I exclude this step, the pipeline is able to run without issue and uses no swap memory.

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