Nextflow Version
Sam Minot edited this page Apr 20, 2021
·
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The geneshot tool takes advantage of powerful features of the Nextflow workflow management system
that were introduced in version 20.10.0
. We recommend using this version or higher when running geneshot.
In order to update your Nextflow installation, follow these instructions,
or simply use the NXF_VER
environment variable when running a command. For example,
NXF_VER=20.10.0 nextflow run ...
- Getting Started
- De novo vs. Reference-Based Analysis
- Running Geneshot
- Output Files
- Input File Format
- Nextflow Configuration
- Helpful Scripts:
- Concepts: