Useful Options
Sam Minot edited this page Jan 17, 2020
·
1 revision
There are a handful of useful Nextflow options which are nice to take advantage of.
Use the -with-report flag to write out a summary of the analysis execution as HTML.
Use the -work-dir flag to specify the working directory for Nextflow execution
(docs).
Use the -resume flag to automatically retrieve cached calls.
- Getting Started
- De novo vs. Reference-Based Analysis
- Running Geneshot
- Output Files
- Input File Format
- Nextflow Configuration
- Helpful Scripts:
- Concepts: