Extracting the gene annotation table

It can be difficult some times to load data from an HDF5 file. To help make this process a bit easier, we have made a small Python script that will read the gene annotation table from a geneshot results HDF5 file and save it as a CSV.

You can find the script here: https://gist.github.com/sminot/1294d4f93c3b4e45f1de56ab95d9a8ce

To use it, simply save the file as geneshot_extract_gene_annot.py and then run:

geneshot_extract_gene_annot.py --input_fp RESULTS.hdf5

(where RESULTS.hdf5 is the *.results.hdf5 file produced in your geneshot output folder)