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20 Open 45 Closed
20 Open 45 Closed
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Issues list

Missing slash in manifest.qc.csv
#91 opened Apr 3, 2024 by clairedubin
getting started with geneshot on nextflow
#88 opened Jun 6, 2023 by gchen98
Results directory different from wiki when using dev branch
#85 opened May 11, 2022 by SJohnsonMayo
6
[Security] Workflow test.yaml is using vulnerable action actions/checkout
#82 opened Dec 19, 2021 by akulpillai
max_iters error in makeInitialCAGs module
#78 opened Jun 28, 2021 by dhwanidesai
Only make a gene catalog
#76 opened Apr 29, 2021 by jgolob
@jgolob
2
Preprocessing only
#75 opened Apr 29, 2021 by jgolob
1
@jgolob
add_corncob error
#74 opened Apr 29, 2021 by jgolob
@sminot
Allow users to input interleaved FASTQ files
#68 opened Mar 16, 2021 by sminot
Add option to output a gene-specimen-count matrix
#67 opened Mar 12, 2021 by jgolob
Still running preprocessing even when provided a catalog / assemblies
#66 opened Mar 9, 2021 by jgolob
1
Assess CAG 'completeness' with CheckM enhancement New feature or request
#65 opened Mar 4, 2021 by sminot
Selectable CAG generation method in v0.9 discussion
#64 opened Mar 2, 2021 by jgolob
@sminot
3
Master Issue - v0.9 discussion enhancement New feature or request
#56 opened Jan 17, 2021 by sminot
@sminot
8
Reference database availability
#52 opened Dec 3, 2020 by jgolob
input file format documentation
#51 opened Dec 2, 2020 by jgolob
@jgolob
Add PSI-BLAST discussion enhancement New feature or request
#44 opened Aug 7, 2020 by sminot
@sminot @jgolob
Set annotation databases by default enhancement New feature or request
#34 opened Apr 24, 2020 by sminot
@sminot
2
Check for empty inputs enhancement New feature or request
#28 opened Apr 3, 2020 by sminot
@sminot
add antiSMASH for synthetic pathway identification discussion
#26 opened Mar 9, 2020 by jgolob
1
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