Single cell trajectory detection
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Updated
May 13, 2024 - Jupyter Notebook
Single cell trajectory detection
R toolkit for single cell genomics
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Community-provided extensions to Seurat
Deep probabilistic analysis of single-cell and spatial omics data
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
Evaluation framework for computationally inferred gene networks from single-cell data.
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Various utility functions for Seurat single-cell analysis
Spatial Single Cell Analysis in Python
TreeCorTreat
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
Inference of Disease Progressive Level in Single-Cell Data
𝒫robabilistic modeling of RNA velocity ⬱
CellRank: dynamics from multi-view single-cell data
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Single cell Perturbations - Analysis of Differential gene Expression
Reference mapping for single-cell genomics
Single Cell RNA-seq Course
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