#
gene-regulatory-network
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63 public repositories
matching this topic...
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Updated
Apr 8, 2024
Python
Context specific and dynamic gene regulatory network reconstruction and analysis
Updated
Apr 23, 2024
Python
netZooR is a network biology package implemented in R.
netZooPy is a network biology package implemented in Python.
Updated
Mar 29, 2024
Jupyter Notebook
Fast visualization tool for large-scale and high dimensional single-cell data
Updated
Mar 5, 2023
Python
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Updated
Oct 6, 2023
MATLAB
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
Updated
May 9, 2024
Jupyter Notebook
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
netZooM is a network biology package implemented in MATLAB.
Updated
Jun 28, 2023
MATLAB
netZooC is a network biology package implemented in C.
Adversarial generation of gene expression data using Generative Adversarial Networks
Updated
Oct 26, 2021
Jupyter Notebook
Code for scKINETICS (ISMB 2023)
Updated
Oct 23, 2023
Jupyter Notebook
Regression with Summary Statistics exploiting Network Topology.
Causal inference, differential expression, and co-expression for scRNA-seq
Updated
Nov 4, 2021
Python
Evaluation framework for computationally inferred gene networks from single-cell data.
Updated
May 8, 2024
Jupyter Notebook
Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Updated
Nov 22, 2022
HTML
A deep model infers gene regulation networks from scRNA-seq data.
Updated
Jun 13, 2023
Jupyter Notebook
Network-Oriented Repurposing of Drugs Python Package
Updated
Nov 6, 2023
Jupyter Notebook
R and MATLAB scripts for MAGICAL
It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
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