Popular repositories

1. snakepipes snakepipes Public

   Customizable workflows based on snakemake and python for the analysis of NGS data

   Python 371 85

2. parkour parkour Public archive

   Moved to: https://github.com/maxplanck-ie/parkour2

   JavaScript 33 16

3. HiCAssembler HiCAssembler Public

   Software to assemble contigs/scaffolds into chromosomes using Hi-C data

   Python 27 4

4. parkour2 parkour2 Public

   Parkour2: Laboratory Information Management System 👩🏻‍🔬 🧬 👨🏽‍💻

   Python 22 5

5. rna-seq-qc rna-seq-qc Public

   Rna-seq pipeline, From FASTQ to differential expression analysis...

   Python 19 11

6. 10X_snakepipe 10X_snakepipe Public

   A snakemake pipeline for 10X genomics cellranger

   Python 19 4