An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Inside Out Positional Tracking (6DoF) for GearVR/Cardboard/Daydream using ARCore v1.6.0

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Seurat meets tidyverse. The best of both worlds.

Generate high quality, publication ready visualizations for single cell transcriptomics data.

A guide to using a Seurat object in conjunction with RNA Velocity

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

Bring your single-cell data to life

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

Various utility functions for Seurat single-cell analysis

Signac

R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.

.h5mu files interface for Seurat

Label elements within user drawn gates

represent each cell in UMAP plots as a pie chart

This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.