Data for Smith et al. 2021 in Ecology and Evolution
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Updated
Apr 27, 2021 - R
Data for Smith et al. 2021 in Ecology and Evolution
Genomics data science specialization (John Hopkins University)
Reverse Complement PCR (RC-PCR_ Classification pipeline.
Final Exam for Coursera's Python for Genomic Data Science course
This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.
This is a TxDb package created for Coffea arabica (coffee).
This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects
Filter DE genes based on log2Folchange, FDR value or both
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
Kissinger Research Group Shared Code
A web application for interactive visualization and exploratory data analysis of variant call matrices
NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.
Genetic Algorithm implementation to study haplotypes of genomic features
Using NVIDIA Deepmind's Nucleotide Transformer to generate embeddings for yeast genomes.
Automating WES Data analysis (primarily of Cancer).
Framework for investigation of cell-type-specific regulation and expression in rare disease
Extraction of genomic background set of DNA sequences for a given foreground set of sequences for subsequent de novo motif discovery
Supervised classification of various species DNA sequences using FFT and Machine Learning.
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