Final Exam for Coursera's Python for Genomic Data Science course
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Updated
Oct 12, 2022 - Jupyter Notebook
Final Exam for Coursera's Python for Genomic Data Science course
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.
NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.
Kissinger Research Group Shared Code
Genomics Carpentries Workshop at Rutgers University, April 25-26, 2024
Filter DE genes based on log2Folchange, FDR value or both
Genetic Algorithm implementation to study haplotypes of genomic features
Reverse Complement PCR (RC-PCR_ Classification pipeline.
Data for Smith et al. 2021 in Ecology and Evolution
This is a TxDb package created for Coffea arabica (coffee).
Supervised classification of various species DNA sequences using FFT and Machine Learning.
Using NVIDIA Deepmind's Nucleotide Transformer to generate embeddings for yeast genomes.
This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.
Machine Learning in Omics: Integration of Metagenomics and Metabolomics.
Genomics data science specialization (John Hopkins University)
To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.
Extraction of genomic background set of DNA sequences for a given foreground set of sequences for subsequent de novo motif discovery
Automating WES Data analysis (primarily of Cancer).
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
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