Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Updated
Apr 25, 2024 - Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Toolbox for Studying Bacteria, Archaea, and Complex Taxons
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
non-redundant, compressed, journalled, file-based storage for biological sequences
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
De novo genome assembly and multisample variant calling
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
provides common tools and lookup tables used primarily by the hgvs and uta packages
Earl Grey: A fully automated TE curation and annotation pipeline
Randomly subsample sequencing reads
Scripts and procedures for detecting positively selected genes and codons in primates
Bioinformatics on GCP, AWS or Azure
Long-reads Gap-free Chromosome-scale Assembler
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
A collaborative notebook for genes and genomes
Using combined evidence from replicates to evaluate ChIP-seq peaks
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
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