Skip to content

Issues: biocommons/biocommons.seqrepo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 79 Closed
24 Open 79 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

IPython dependency -- remove it or make it optional enhancement New feature or request
#147 opened May 10, 2024 by jsstevenson
seqrepo pull expects existing seqrepo dir bug Something isn't working
#146 opened Apr 20, 2024 by jsstevenson
ModuleNotFoundError (pkg_resources) on import in 3.12 bug Something isn't working
#145 opened Apr 16, 2024 by jsstevenson
pre-commit hook causes unexpected problems on existing codebase
#143 opened Apr 9, 2024 by theferrit32
1
Command Line usage example commands do not run properly bug Something isn't working documentation Improvements or additions to documentation
#137 opened Feb 13, 2024 by yxuil
@jsstevenson
3
Generalize the seqrepo interface and implement new backends project proposal project proposal for interns and GSoC students
#136 opened Feb 5, 2024 by reece
2
Seqrepo not giving back consistent data bug Something isn't working
#129 opened Jan 5, 2024 by wlymanambry
Repeated sequence not being captured entirely, intermittent data issues bug Something isn't working
#128 opened Jan 2, 2024 by wlymanambry
1
Sqlite3 timestamp converter is deprecated as of Python 3.12 bug Something isn't working
#127 opened Jan 2, 2024 by jsstevenson
1
update seqrepo to use the current biocommons.example project template
#119 opened Sep 17, 2023 by reece 0.7
@reece
2
Make coding style consistent with hgvs / enforce black and pylint
#108 opened May 4, 2023 by holtgrewe 0.7
2
Remove namespace warning
#106 opened May 4, 2023 by holtgrewe 0.7
2
Proof of concept for release-please in biocommons.seqrepo
#104 opened May 3, 2023 by holtgrewe 0.7
2
Suggestion: Build Ensembl transcript sequences by concatenating genomic exons enhancement New feature or request keep alive exempt issue from staleness checks
#103 opened Mar 21, 2023 by davmlaw
3
RFC: How to handle sequence casing and other transformations
#94 opened Mar 3, 2021 by reece
2
Unable to get the data '2021-01-05' in seqrepo. bug Something isn't working
#93 opened Jan 26, 2021 by git4waki
2
Identifiers cleanup enhancement New feature or request
#91 opened Nov 26, 2020 by reece
3 tasks
0.7
2
Re-implement support for INSDC identifiers
#90 opened Nov 25, 2020 by reece 0.7
2
Implement sequence prefetching with in-memory cache keep alive exempt issue from staleness checks
#89 opened Oct 31, 2020 by reece
3
Add check constraints in DB schema enhancement New feature or request keep alive exempt issue from staleness checks
#84 opened Apr 11, 2020 by reece
2 tasks
4
Provide a mechanism to create release notes for a data release from logged changes documentation Improvements or additions to documentation keep alive exempt issue from staleness checks
#77 opened Apr 5, 2020 by reece
3
Support circular sequences enhancement New feature or request keep alive exempt issue from staleness checks
#70 opened Sep 7, 2019 by reece
4
Create abstract interface
#61 opened May 29, 2019 by reece 0.7
9
write documentation, deploy to RTD documentation Improvements or additions to documentation keep alive exempt issue from staleness checks
#8 opened Oct 2, 2016 by reece
3
ProTip! Type g i on any issue or pull request to go back to the issue listing page.