This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
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Updated
May 4, 2023 - Python
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
BIGO: A web application to analyse gene enrichment analysis results
Data analysis and integration of several transcriptomics studies to uncover genes and co-expression networks associated with the ageing process.
Ontology enrichment analysis over any OWL ontology
Home to the development of the TREND-DB application
PCTSEA (Proteomics Cell Type Enrichment Analysis) is a tool designed to statistically determine which cell types are significatively enriched in an input set of proteins with certain relative expression values. This process is done by using a database of datasets of RNASeq expression values from single cells from which the cell type is known (or…
A shiny app to perform pathway, drug, brain cell type and brain region (based on the Allen Brain Atlas data) enrichment and visualize the results.
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
Scripts to perform gene set enrichment analysis (GSEA)
An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data
TCR Enrichment Analysis (TEA) Webtool
🔎 Web-based Tool for Interacting with FOBI Ontology
Transcriptional differences between Miscanthus hybrids with contrasting starch and sucrose concentrations and biomass production
Analysis of enrichment of gene sets with a GUI and CLI
Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
GSApp Pathway Analysis
Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.
A use case of InterMine. I personally used it to grab gene lists associated with GOterms.
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