Visualization of Functional Enrichment Result

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

MSigDB gene sets for multiple organisms in a tidy data format

Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

R package for pathway analysis in scRNA-seq data

A web application to visualize and edit pathway models

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

Differential gene expression analysis and pathway analysis of RNAseq data

A project for exploring differentially active signaling paths related to proteomics datasets

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

Explore biomolecular pathways in Reactome from the command-line or a Python script

Disease pathways in the human interactome

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Harmonizing pathway databases using Biological Expression Language (BEL)

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

A manually curated database of human gut metabolic modules.

An R package for multi-dimensional pathway enrichment analysis