zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Demo of analyses using Swish from the fishpond Bioc package

Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.

Simple Snakemake RNA-Seq pipeline

An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data

R-shiny app for processing differential gene expression data

my_RNA_seq_pipelines

Finding out what went wrong with cancer cells of uveal melanoma

Jupyter notebooks for DGE results and ontology analysis and visualisation.