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markziemann/README.md

Hi there 👋

I am a Lecturer and researcher in computational biology at Burnet Institute, Australia. Our group is focused on building data resources and software tools to accelerate biomedical discovery. We collaborate closely with clinicians and biologists to get the most out of their 'omics experiments. Our lab is committed to reproducibility, open science, and diversity.

I code mostly in R and bash. I'm looking to learn more about machine learning, web design and other languages used for bioinformatics including python.

Topic areas of interest:

  • Transcriptome analysis

  • Multi-omics/epigenomics

  • Enrichment analysis

  • Scientific rigour

List of scientific publications: Google Scholar and ORCID

Contact me:

  • twitter: @mdziemann

  • email: mark.ziemann αt gmail.com

Pronouns: he/him

Pinned

  1. dee2 dee2 Public

    Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

    Shell 39 8

  2. mitch mitch Public

    An R package for multi-dimensional pathway enrichment analysis

    R 14 4

  3. getDEE2 getDEE2 Public

    Programmatic access to the DEE2 RNA expression dataset.

    R 4

  4. gmea gmea Public

    Gene Methylation Enrichment Analysis

    R 3