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Achievements

Achievement: YOLOAchievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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@fls-bioinformatics-core
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ycl6/README.md

Hi there 👋

Welcome to my GitHub profile!

R Packages

NGS Tutorials

Misc.

  • Create a GitHub Pages site for your repository
  • Create stacked violin plots from Seurat, SingleCellExperiment and data.frame objects
  • Gallery showcasing Pandoc syntax highlight styles before and after version 2.11
  • Short examples of using R in data analysis and visualisation
    • National survey
      • Deaths registered monthly in England and Wales
      • COVID-19 Vaccination Statistics in England
    • Gene expression
      • Visualise differential expression analysis results with MA plot
      • Normalisation of bulk RNA-seq counts
      • Plot ligand-receptor expression on UMAP and t-SNE projection
    • Others
      • Visualise interaction between 2 variables with parallel sets diagrams
      • Testing of the Spatial Image Analysis of Tissues (SPIAT) R package

Pinned

  1. scRUtils scRUtils Public

    scRUtils: Single-Cell Sequencing Analysis Utilities

    R 3 1

  2. Simple-R-gists Simple-R-gists Public

    Showcase short R examples

    Jupyter Notebook 1

  3. 16S-Demo 16S-Demo Public

    Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output

    R 4 4

  4. 16S-rDNA-V3-V4 16S-rDNA-V3-V4 Public

    16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

    R 33 18

  5. StackedVlnPlot StackedVlnPlot Public

    Create stacked violin plot

    38 10

  6. GO-Enrichment-Analysis-Demo GO-Enrichment-Analysis-Demo Public

    Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output

    R