R Markdown script to perform bioinformatic analysis on RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
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Updated
May 22, 2024 - R
R Markdown script to perform bioinformatic analysis on RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Brings bulk and pseudobulk transcriptomics to the tidyverse
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interactive Bioinformatics Exploratory Tools
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Probabilistic outlier identification for bulk RNA sequencing data
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
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